• On-Demand Informatics
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• Biological Sequence Analysis
  • Application Plugins
• Patent Sequence Search
  • Portfolio Analysis (HTr)
  • Freedom-to-Operate
  • Short Sequence Search
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• GenomeQuest Add-Ons
  • DrugBank Pro
  • High Throughput Module

 

 

On-Demand Informatics Solution

 

On-Demand Informatics saves time and money by allowing researchers to securely access our massive bio-medical compute cloud to align, assemble and annotate gigabases of raw sequence data.

Scientific Accuracy

Our proprietary HS³ Suite is the key technology that enables GenomeQuest to deliver high-quality, accurate, and timely analysis of billions of alignments from trillions of pair-wise comparisons. Intelligently select and track the “Best hits” according to your scientific criteria.

The technology allows exhaustive "all-against-all" comparisons of all sequencing reads against all reference transcripts, genomes and proteomes to filter out sample contaminants before producing accurate well annotated assemblies. This approach to in silico purification works equally well with both short-read and long-read sequencing platform technologies.

Flexible Applications

GenomeQuest has developed templates for important next-generation sequencing applications including:

> Digital Gene Expression
> Transcript Discovery
> Genome Resequencing
> Environmental Metagenomics
> SNP Discovery

Since no two scientific studies are identifical, a GenomeQuest informatics expert will confirm the bioinformatics parameters to configure the data securely on our cloud, and monitor the execution of the pipeline.

Open Data Delivery

The pipeline produces reports summarizing the results as well as databases of aligned, annotated reads and annotated assemblies. Using secure FTP and secure web protocols, researchers will be able to analyze the results on the GenomeQuest platform or download the results into in-house systems for further analysis.

Features	Benefits
Exhaustive all-against-all comparison of ALL sequencing reads against ALL reference transcripts, genomes, and optionally proteomes.	Identify contaminants in-silico. The only way to produce accurate annotation results.
On-demand, large-scale computational resources, algorithms, and reference data.	Achieve high-quality scientific results within days not months. Saves man-years of development effort, cost, and risk. Pay for what you use.
GenomeQuestLive web-application indexes your data for browsing, searching, exporting and launching analysis applications.	Productively manage and mine your data, without the need for separate bioinformatics support resources.

 

 

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